Tools

Try out a set of tools and libraries useful for work in both the bioinformatics and privacy/security communities. Please contact us if you want to include a pointer to any other relevant tools or libraries.

1000 Genomes Data

Data
The 1000 Genomes data contains the sequence and alignment data generated by the 1000genomes project.

HapMap Data

Data
The HapMap genome datasets include genotypes, allele frequencies, LD data, etc, published by the International HapMap Project.

GenoGuard

Privacy-enhancing tools
GenoGuard is a project designed to protect genomic data in the long term even against adversaries with unlimited computational power, by making use of advanced cryptographic solutions like honey encryption.

Genodroid

Privacy-enhancing tools
Genodroid is an android toolkit for privacy-preserving genomic testing.

Haploview

Bioinformatics tools
Haploview is an open-source project designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks related to such analyses.

PLINK

Bioinformatics tools
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.

Htsjdk

Bioinformatics tools
HTSJDK is an open-source implementation of a unified Java library for accessing common file formats, such as SAM and VCF, used for high-throughput sequencing data.