Try out a set of tools and libraries useful for work in both the bioinformatics and privacy/security communities. Please contact us if you want to include a pointer to any other relevant tools or libraries.
The 1000 Genomes data contains the sequence and alignment data generated by the 1000genomes project.
The HapMap genome datasets include genotypes, allele frequencies, LD data, etc, published by the International HapMap Project.
GenoGuard is a project designed to protect genomic data in the long term even against adversaries with unlimited computational power, by making use of advanced cryptographic solutions like honey encryption.
Genodroid is an android toolkit for privacy-preserving genomic testing.
Haploview is an open-source project designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks related to such analyses.
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
HTSJDK is an open-source implementation of a unified Java library for accessing common file formats, such as SAM and VCF, used for high-throughput sequencing data.